Index

A

add_glycans2peptide() (sugarpy.run.Run method)

add_results() (sugarpy.results.Results method)

B

build_combinations() (sugarpy.run.Run method)

build_match_dict() (sugarpy.run.Run method) build_rt_lookup() (sugarpy.run.Run method)

C

calc_and_match_frag_ions() (sugarpy.results.Results method) calc_oxonium_ions() (sugarpy.results.Results method)

calc_Y_ions() (sugarpy.results.Results method) check_peak_presence() (sugarpy.results.Results method)

E

extract_best_matches() (sugarpy.results.Results method)

extract_pep_and_glycan_comp() (sugarpy.run.Run method)

G

glycan_to_tuple() (sugarpy.results.Results method)

M

main() (in module build_glycopeptide_combinations) (in module parse_peptide_sequence_input_file) (in module sugarpy_results_example) (in module sugarpy_run_example)

P

parse_ident_file() (sugarpy.run.Run method) parse_result_file() (sugarpy.results.Results method) plot_annotated_spectra() (sugarpy.results.Results method)

plot_glycan_elution_profile() (sugarpy.results.Results method) plot_molecule_elution_profile() (sugarpy.results.Results method) plot_scatter_vec_id() (sugarpy.results.Results method)

Q

quantify() (sugarpy.run.Run method)

R

Results (class in sugarpy.results)

Run (class in sugarpy.run)

S

sort_glycan_trees() (sugarpy.results.Results method) sort_plot_lists() (sugarpy.results.Results method)

sort_results() (sugarpy.run.Run method) sugarpy.results (module)

V

validate_results() (sugarpy.run.Run method)

W

write_results2csv() (sugarpy.results.Results method)